- Predicted Gene MLOC_54016
MLOC_54016 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_54016_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_54016_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.92802 | 2.25363 | 2.45459 | 2.3815 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.33459 | 2.17539 | 1.14511 | 1.47063 |
INF1 | Young developing inflorescences (5mm) | 0.488085 | 0.393587 | 0.333438 | 0.361219 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.89258 | 0.488395 | 1.06688 | 0.865631 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.07308 | 1.47321 | 2.33516 | 1.81658 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.13376 | 2.99859 | 0.0264483 | 6.32371 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.13046 | 0.709211 | 1.52503 | 1.10608 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.03188 | 0.989338 | 0.71266 | 2.36127 |
CDS Structure of MLOC_54016
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_54016.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g34720.1 |
-2 |
5e-105 |
311 |
142/198 (72%) |
13107.m03548 protein harpin-induced protein 1 domain containing protein, expressed |
TAIR PP10 |
AT4G05220.1 |
-2 |
1e-44 |
155 |
72/211 (34%) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:2685104-2685784 REVERSE LENGTH=226 |