MLOC_54016 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.928022.253632.454592.3815
LEAShoots from the seedlings (10 cm shoot stage)2.334592.175391.145111.47063
INF1Young developing inflorescences (5mm)0.4880850.3935870.3334380.361219
INF2Developing inflorescences (1-1.5 cm)0.892580.4883951.066880.865631
ROORoots from the seedlings (10 cm shoot stage)2.073081.473212.335161.81658
NODDeveloping tillers at six leaf stage, 3rd internode2.133762.998590.02644836.32371
CAR5Developing grain, bracts removed (5 DPA)1.130460.7092111.525031.10608
CAR15Developing grain, bracts removed (15 DPA)1.031880.9893380.712662.36127



CDS Structure of MLOC_54016






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_54016.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_54016.1CUST_13149_PI427708080AvailableAvailablecontig_38812 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g34720.1 -2 5e-105 311 142/198 (72%) 13107.m03548 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT4G05220.1 -2 1e-44 155 72/211 (34%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:2685104-2685784 REVERSE LENGTH=226