MLOC_53998 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.983099.657169.872848.31934
LEAShoots from the seedlings (10 cm shoot stage)4.339852.305582.101832.45835
INF1Young developing inflorescences (5mm)18.774117.540312.872812.9009
INF2Developing inflorescences (1-1.5 cm)11.121414.846411.39812.8367
ROORoots from the seedlings (10 cm shoot stage)3.12346.333326.586336.45325
NODDeveloping tillers at six leaf stage, 3rd internode0.274650.199980.2915440.692159
CAR5Developing grain, bracts removed (5 DPA)13.113213.705716.483212.6067
CAR15Developing grain, bracts removed (15 DPA)0.8571120.9394390.6834221.7495



CDS Structure of MLOC_53998






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53998.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53998.2CUST_13146_PI427708080AvailableAvailablecontig_38807 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18350.1 -3 0.0 1410 725/870 (83%) 13103.m02198 protein importin subunit beta, putative, expressed
TAIR PP10 AT3G08943.1 -3 0.0 1066 554/870 (64%) ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871