- Predicted Gene MLOC_53998
MLOC_53998 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 6.98309 | 9.65716 | 9.87284 | 8.31934 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.33985 | 2.30558 | 2.10183 | 2.45835 |
INF1 | Young developing inflorescences (5mm) | 18.7741 | 17.5403 | 12.8728 | 12.9009 |
INF2 | Developing inflorescences (1-1.5 cm) | 11.1214 | 14.8464 | 11.398 | 12.8367 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.1234 | 6.33332 | 6.58633 | 6.45325 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.27465 | 0.19998 | 0.291544 | 0.692159 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.1132 | 13.7057 | 16.4832 | 12.6067 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.857112 | 0.939439 | 0.683422 | 1.7495 |
CDS Structure of MLOC_53998
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53998.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g18350.1 |
-3 |
0.0 |
1410 |
725/870 (83%) |
13103.m02198 protein importin subunit beta, putative, expressed |
TAIR PP10 |
AT3G08943.1 |
-3 |
0.0 |
1066 |
554/870 (64%) |
ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871 |