MLOC_53997 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.091139.70640.567340.0462
LEAShoots from the seedlings (10 cm shoot stage)19.299216.721212.383513.9807
INF1Young developing inflorescences (5mm)44.784845.140141.096236.1151
INF2Developing inflorescences (1-1.5 cm)31.235632.770127.998534.3591
ROORoots from the seedlings (10 cm shoot stage)14.760625.215721.198329.0836
NODDeveloping tillers at six leaf stage, 3rd internode2.446792.740625.5300111.4011
CAR5Developing grain, bracts removed (5 DPA)29.003827.796531.137328.582
CAR15Developing grain, bracts removed (15 DPA)4.754774.45344.6776310.3753



CDS Structure of MLOC_53997






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53997.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364260NoneNoneNoneNone
MLOC_53997.2CUST_18101_PI427708080AvailableAvailablecontig_38752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g19930.1 +2 0.0 872 437/542 (81%) 13103.m02388 protein adenylosuccinate lyase, putative, expressed
TAIR PP10 AT4G18440.1 +2 0.0 635 309/453 (68%) L-Aspartase-like family protein | chr4:10186385-10188832 REVERSE LENGTH=536