MLOC_53969 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2093010.5043030.2930880.351993
LEAShoots from the seedlings (10 cm shoot stage)2.442194.47488.085373.93441
INF1Young developing inflorescences (5mm)0.920621.306761.241310.879222
INF2Developing inflorescences (1-1.5 cm)0.6464370.8825940.5506960.736287
ROORoots from the seedlings (10 cm shoot stage)0.4044020.4307560.5502030.484625
NODDeveloping tillers at six leaf stage, 3rd internode0.01456050.04067870.02358760.118381
CAR5Developing grain, bracts removed (5 DPA)0.5035280.4328970.6794080.466098
CAR15Developing grain, bracts removed (15 DPA)1.00210.9883710.779642.00232



CDS Structure of MLOC_53969






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53969.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367895NoneNoneNoneNone
MLOC_53969.5CUST_18100_PI427708080AvailableAvailablecontig_38752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53994.1 -3 0.0 1081 524/816 (64%) 13104.m05577 protein kinase, putative, expressed
TAIR PP10 AT4G21390.1 -3 0.0 612 363/826 (44%) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849