MLOC_53965 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.802555.734364.812424.97679
LEAShoots from the seedlings (10 cm shoot stage)2.984232.54964.286042.78071
INF1Young developing inflorescences (5mm)3.54313.562323.244312.84989
INF2Developing inflorescences (1-1.5 cm)2.910324.123493.411163.86429
ROORoots from the seedlings (10 cm shoot stage)3.876124.59174.1325.29573
NODDeveloping tillers at six leaf stage, 3rd internode2.386762.066883.17847.51384
CAR5Developing grain, bracts removed (5 DPA)2.716783.136453.289642.96677
CAR15Developing grain, bracts removed (15 DPA)0.688110.5076420.8120961.4894



CDS Structure of MLOC_53965






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53965.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369450NoneNoneNoneNone
MLOC_53965.1CUST_3169_PI427708080AvailableAvailablecontig_38782 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07190.1 +1 0.0 794 405/508 (80%) 13112.m00750 protein CBS domain-containing protein, putative, expressed
TAIR PP10 AT3G52950.2 +1 0.0 640 340/521 (65%) CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr3:19634866-19636536 FORWARD LENGTH=556