MLOC_53950 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.634110.26849.9566811.0315
LEAShoots from the seedlings (10 cm shoot stage)3.644691.055972.396072.07245
INF1Young developing inflorescences (5mm)1.055540.7683270.4878640.688204
INF2Developing inflorescences (1-1.5 cm)0.120550.09527370.1045030.122301
ROORoots from the seedlings (10 cm shoot stage)5.757839.945716.4177110.9107
NODDeveloping tillers at six leaf stage, 3rd internode13.664514.490515.506744.5532
CAR5Developing grain, bracts removed (5 DPA)1.806781.394681.053181.42557
CAR15Developing grain, bracts removed (15 DPA)0.3749360.4181840.8596581.21209



CDS Structure of MLOC_53950






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53950.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358114NoneNoneNoneNone
MLOC_53950.2CUST_3168_PI427708080AvailableAvailablecontig_38769 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g33740.1 +2 0.0 828 401/487 (82%) 13108.m03520 protein CSLA11 - cellulose synthase-like family A, expressed
TAIR PP10 AT5G03760.1 +2 0.0 628 290/458 (63%) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533