- Predicted Gene MLOC_53948
MLOC_53948 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.79192 | 1.67247 | 2.38674 | 2.03822 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.23879 | 0.127031 | 0.242744 | 0.445035 |
INF1 | Young developing inflorescences (5mm) | 6.92433 | 9.17891 | 8.89528 | 7.45673 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.77701 | 11.3369 | 10.1082 | 11.5289 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.90982 | 1.52151 | 1.75812 | 1.73014 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.157352 | 0.191772 | 0.102027 | 0.498647 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.88556 | 6.52797 | 4.87576 | 5.46318 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.36157 | 3.76047 | 4.69512 | 10.5485 |
CDS Structure of MLOC_53948
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53948.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g44290.1 |
+3 |
1e-171 |
493 |
239/304 (79%) |
13103.m04765 protein expansin precursor, putative, expressed |
TAIR PP10 |
AT2G45110.1 |
+3 |
1e-77 |
247 |
128/271 (47%) |
| Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin B4 | chr2:18599575-18601237 FORWARD LENGTH=259 |