MLOC_53948 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.791921.672472.386742.03822
LEAShoots from the seedlings (10 cm shoot stage)1.238790.1270310.2427440.445035
INF1Young developing inflorescences (5mm)6.924339.178918.895287.45673
INF2Developing inflorescences (1-1.5 cm)8.7770111.336910.108211.5289
ROORoots from the seedlings (10 cm shoot stage)1.909821.521511.758121.73014
NODDeveloping tillers at six leaf stage, 3rd internode0.1573520.1917720.1020270.498647
CAR5Developing grain, bracts removed (5 DPA)4.885566.527974.875765.46318
CAR15Developing grain, bracts removed (15 DPA)4.361573.760474.6951210.5485



CDS Structure of MLOC_53948






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53948.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374042NoneNoneNoneNone
MLOC_53948.1CUST_3166_PI427708080AvailableAvailablecontig_38768 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g44290.1 +3 1e-171 493 239/304 (79%) 13103.m04765 protein expansin precursor, putative, expressed
TAIR PP10 AT2G45110.1 +3 1e-77 247 128/271 (47%) | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin B4 | chr2:18599575-18601237 FORWARD LENGTH=259