- Predicted Gene MLOC_53947
MLOC_53947 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 111.491 | 96.6791 | 97.0985 | 104.384 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 64.288 | 26.0168 | 33.1441 | 35.477 |
INF1 | Young developing inflorescences (5mm) | 52.3867 | 49.5084 | 48.3625 | 45.1658 |
INF2 | Developing inflorescences (1-1.5 cm) | 34.9933 | 44.7114 | 38.4241 | 46.7024 |
ROO | Roots from the seedlings (10 cm shoot stage) | 69.8487 | 70.3151 | 62.4964 | 85.3925 |
NOD | Developing tillers at six leaf stage, 3rd internode | 31.5258 | 37.7395 | 22.4586 | 116.129 |
CAR5 | Developing grain, bracts removed (5 DPA) | 94.7039 | 103.543 | 99.8847 | 104.586 |
CAR15 | Developing grain, bracts removed (15 DPA) | 20.5921 | 19.0014 | 20.4957 | 49.7342 |
CDS Structure of MLOC_53947
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53947.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g44300.1 |
+3 |
0.0 |
647 |
319/332 (96%) |
13103.m04767 protein transketolase, putative, expressed |
TAIR PP10 |
AT1G30120.1 |
+3 |
0.0 |
595 |
291/328 (89%) |
| Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 beta | chr1:10584350-10586477 REVERSE LENGTH=406 |