MLOC_53947 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains111.49196.679197.0985104.384
LEAShoots from the seedlings (10 cm shoot stage)64.28826.016833.144135.477
INF1Young developing inflorescences (5mm)52.386749.508448.362545.1658
INF2Developing inflorescences (1-1.5 cm)34.993344.711438.424146.7024
ROORoots from the seedlings (10 cm shoot stage)69.848770.315162.496485.3925
NODDeveloping tillers at six leaf stage, 3rd internode31.525837.739522.4586116.129
CAR5Developing grain, bracts removed (5 DPA)94.7039103.54399.8847104.586
CAR15Developing grain, bracts removed (15 DPA)20.592119.001420.495749.7342



CDS Structure of MLOC_53947






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53947.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367912NoneNoneNoneNone
MLOC_53947.1CUST_3165_PI427708080AvailableAvailablecontig_38768 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g44300.1 +3 0.0 647 319/332 (96%) 13103.m04767 protein transketolase, putative, expressed
TAIR PP10 AT1G30120.1 +3 0.0 595 291/328 (89%) | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 beta | chr1:10584350-10586477 REVERSE LENGTH=406