MLOC_53920 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.1250210.14549.0089510.1637
LEAShoots from the seedlings (10 cm shoot stage)7.5690211.2049.319328.50525
INF1Young developing inflorescences (5mm)14.722218.52215.950114.7587
INF2Developing inflorescences (1-1.5 cm)22.359519.895122.638224.9796
ROORoots from the seedlings (10 cm shoot stage)6.1811410.945610.993413.3629
NODDeveloping tillers at six leaf stage, 3rd internode3.072073.094045.0977611.8436
CAR5Developing grain, bracts removed (5 DPA)7.627699.119237.716888.8421
CAR15Developing grain, bracts removed (15 DPA)2.744822.586253.452147.15226



CDS Structure of MLOC_53920






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53920.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53920.1CUST_13130_PI427708080AvailableAvailablecontig_38741 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g17294.2 -2 3e-121 352 173/194 (89%) 13108.m01848 protein PSF3 - Putative GINS complex subunit, expressed
TAIR PP10 AT3G55490.1 -2 2e-70 221 111/184 (60%) GINS complex protein | chr3:20572171-20573415 REVERSE LENGTH=185