- Predicted Gene MLOC_53920
MLOC_53920 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_53920_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_53920_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 8.12502 | 10.1454 | 9.00895 | 10.1637 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.56902 | 11.204 | 9.31932 | 8.50525 |
INF1 | Young developing inflorescences (5mm) | 14.7222 | 18.522 | 15.9501 | 14.7587 |
INF2 | Developing inflorescences (1-1.5 cm) | 22.3595 | 19.8951 | 22.6382 | 24.9796 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.18114 | 10.9456 | 10.9934 | 13.3629 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.07207 | 3.09404 | 5.09776 | 11.8436 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.62769 | 9.11923 | 7.71688 | 8.8421 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.74482 | 2.58625 | 3.45214 | 7.15226 |
CDS Structure of MLOC_53920
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53920.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g17294.2 |
-2 |
3e-121 |
352 |
173/194 (89%) |
13108.m01848 protein PSF3 - Putative GINS complex subunit, expressed |
TAIR PP10 |
AT3G55490.1 |
-2 |
2e-70 |
221 |
111/184 (60%) |
GINS complex protein | chr3:20572171-20573415 REVERSE LENGTH=185 |