- Predicted Gene MLOC_53917
MLOC_53917 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_53917_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_53917_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.06154 | 4.73099 | 4.10038 | 4.10307 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.43865 | 0.703032 | 0.758916 | 1.13904 |
INF1 | Young developing inflorescences (5mm) | 16.6741 | 16.3565 | 14.6553 | 13.181 |
INF2 | Developing inflorescences (1-1.5 cm) | 13.4352 | 15.1215 | 12.1926 | 14.8012 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.0321 | 3.97096 | 3.58411 | 4.25932 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0516644 | 0.134691 | 0.102386 | 0.411682 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.78316 | 6.56673 | 6.07483 | 6.05587 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.38793 | 0.86384 | 1.24928 | 2.64379 |
CDS Structure of MLOC_53917
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53917.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g02040.1 |
-1 |
0.0 |
924 |
529/978 (54%) |
13105.m00157 protein RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed |
TAIR PP10 |
AT5G45400.1 |
-1 |
0.0 |
613 |
353/818 (43%) |
| Symbols: RPA70C, ATRPA70C | Replication factor-A protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=853 |