MLOC_53917 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.061544.730994.100384.10307
LEAShoots from the seedlings (10 cm shoot stage)2.438650.7030320.7589161.13904
INF1Young developing inflorescences (5mm)16.674116.356514.655313.181
INF2Developing inflorescences (1-1.5 cm)13.435215.121512.192614.8012
ROORoots from the seedlings (10 cm shoot stage)2.03213.970963.584114.25932
NODDeveloping tillers at six leaf stage, 3rd internode0.05166440.1346910.1023860.411682
CAR5Developing grain, bracts removed (5 DPA)6.783166.566736.074836.05587
CAR15Developing grain, bracts removed (15 DPA)1.387930.863841.249282.64379



CDS Structure of MLOC_53917






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53917.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356369NoneNoneNoneNone
MLOC_53917.1CUST_3159_PI427708080AvailableAvailablecontig_38738 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g02040.1 -1 0.0 924 529/978 (54%) 13105.m00157 protein RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
TAIR PP10 AT5G45400.1 -1 0.0 613 353/818 (43%) | Symbols: RPA70C, ATRPA70C | Replication factor-A protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=853