MLOC_53885 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains146.202188.422175.373187.258
LEAShoots from the seedlings (10 cm shoot stage)228.7242.404181.451195.331
INF1Young developing inflorescences (5mm)64.081650.960539.910546.5125
INF2Developing inflorescences (1-1.5 cm)77.229678.235287.999688.8758
ROORoots from the seedlings (10 cm shoot stage)147.388191.727142.954233.006
NODDeveloping tillers at six leaf stage, 3rd internode183.852187.264160.888609.4
CAR5Developing grain, bracts removed (5 DPA)278.898273.204275.406272.981
CAR15Developing grain, bracts removed (15 DPA)38.364735.855737.795187.8627



CDS Structure of MLOC_53885






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53885.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250212.1NoneNoneNoneNone
MLOC_53885.1CUST_18098_PI427708080AvailableAvailablecontig_38718 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39440.1 -2 0.0 1238 670/740 (91%) 13110.m03612 protein transporter family protein, putative, expressed
TAIR PP10 AT4G35300.4 -2 0.0 980 534/745 (72%) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739