MLOC_53883 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.441723.506392.342742.73489
LEAShoots from the seedlings (10 cm shoot stage)0.818020.06533190.1625480.325834
INF1Young developing inflorescences (5mm)10.700310.769411.19739.14448
INF2Developing inflorescences (1-1.5 cm)8.1546410.8179.9155210.5635
ROORoots from the seedlings (10 cm shoot stage)0.6917681.959721.635542.1622
NODDeveloping tillers at six leaf stage, 3rd internode00.02923810.01007750.136097
CAR5Developing grain, bracts removed (5 DPA)2.027211.849422.308381.96688
CAR15Developing grain, bracts removed (15 DPA)0.6451860.2521160.3798181.01493



CDS Structure of MLOC_53883






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53883.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53883.5CUST_13127_PI427708080AvailableAvailablecontig_38715 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g06900.1 +2 0.0 1305 658/850 (77%) 13103.m00760 protein DNA topoisomerase 3 protein, putative, expressed
TAIR PP10 AT5G63920.1 +2 0.0 1184 590/900 (66%) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926