- Predicted Gene MLOC_53880
MLOC_53880 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 10.658 | 12.3401 | 11.5173 | 12.5281 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 13.3927 | 10.9832 | 12.8093 | 11.6704 |
| INF1 | Young developing inflorescences (5mm) | 15.0028 | 13.4278 | 13.3319 | 12.1062 |
| INF2 | Developing inflorescences (1-1.5 cm) | 18.9797 | 16.7259 | 15.8171 | 19.4665 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 10.2636 | 15.7081 | 12.1603 | 19.673 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 11.4979 | 14.1087 | 11.3876 | 51.0809 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.9585 | 15.2184 | 14.2038 | 15.3514 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 10.336 | 10.0178 | 11.3906 | 24.0395 |
CDS Structure of MLOC_53880
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53880.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g33850.1 |
+1 |
0.0 |
914 |
495/606 (82%) |
13105.m03513 protein UBA/TS-N domain containing protein, expressed |
| TAIR PP10 |
AT5G12120.1 |
+1 |
5e-70 |
244 |
194/557 (35%) |
Ubiquitin-associated/translation elongation factor EF1B protein | chr5:3916229-3918088 REVERSE LENGTH=619 |