MLOC_53880 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.65812.340111.517312.5281
LEAShoots from the seedlings (10 cm shoot stage)13.392710.983212.809311.6704
INF1Young developing inflorescences (5mm)15.002813.427813.331912.1062
INF2Developing inflorescences (1-1.5 cm)18.979716.725915.817119.4665
ROORoots from the seedlings (10 cm shoot stage)10.263615.708112.160319.673
NODDeveloping tillers at six leaf stage, 3rd internode11.497914.108711.387651.0809
CAR5Developing grain, bracts removed (5 DPA)15.958515.218414.203815.3514
CAR15Developing grain, bracts removed (15 DPA)10.33610.017811.390624.0395



CDS Structure of MLOC_53880






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53880.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251284.1NoneNoneNoneNone
MLOC_53880.3CUST_3154_PI427708080AvailableAvailablecontig_38711 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33850.1 +1 0.0 914 495/606 (82%) 13105.m03513 protein UBA/TS-N domain containing protein, expressed
TAIR PP10 AT5G12120.1 +1 5e-70 244 194/557 (35%) Ubiquitin-associated/translation elongation factor EF1B protein | chr5:3916229-3918088 REVERSE LENGTH=619