MLOC_53853 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.111732.93233.22927.3486
LEAShoots from the seedlings (10 cm shoot stage)39.055152.604742.892436.5885
INF1Young developing inflorescences (5mm)30.311733.057635.26524.7211
INF2Developing inflorescences (1-1.5 cm)49.313838.227842.970243.8163
ROORoots from the seedlings (10 cm shoot stage)17.028733.040928.587735.2547
NODDeveloping tillers at six leaf stage, 3rd internode48.868256.972451.6004197.1
CAR5Developing grain, bracts removed (5 DPA)59.329158.639262.125953.7633
CAR15Developing grain, bracts removed (15 DPA)56.961648.985144.3657105.76



CDS Structure of MLOC_53853






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53853.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249321.1NoneNoneNoneNone
AK360255NoneNoneNoneNone
MLOC_53853.1CUST_3148_PI427708080AvailableAvailablecontig_38689 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g16440.1 +1 2e-144 446 362/738 (49%) 13110.m01333 protein CUE domain containing protein, expressed
TAIR PP10 AT1G03290.2 +1 2e-53 197 111/202 (55%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). | chr1:807970-810680 FORWARD LENGTH=571