- Predicted Gene MLOC_53853
MLOC_53853 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 20.1117 | 32.932 | 33.229 | 27.3486 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 39.0551 | 52.6047 | 42.8924 | 36.5885 |
| INF1 | Young developing inflorescences (5mm) | 30.3117 | 33.0576 | 35.265 | 24.7211 |
| INF2 | Developing inflorescences (1-1.5 cm) | 49.3138 | 38.2278 | 42.9702 | 43.8163 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 17.0287 | 33.0409 | 28.5877 | 35.2547 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 48.8682 | 56.9724 | 51.6004 | 197.1 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 59.3291 | 58.6392 | 62.1259 | 53.7633 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 56.9616 | 48.9851 | 44.3657 | 105.76 |
CDS Structure of MLOC_53853
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53853.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g16440.1 |
+1 |
2e-144 |
446 |
362/738 (49%) |
13110.m01333 protein CUE domain containing protein, expressed |
| TAIR PP10 |
AT1G03290.2 |
+1 |
2e-53 |
197 |
111/202 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). | chr1:807970-810680 FORWARD LENGTH=571 |