MLOC_53829 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.57556.031527.21095.46828
LEAShoots from the seedlings (10 cm shoot stage)4.608192.465872.888352.52299
INF1Young developing inflorescences (5mm)5.36837.256317.14494.43903
INF2Developing inflorescences (1-1.5 cm)4.517564.740245.304684.24315
ROORoots from the seedlings (10 cm shoot stage)11.30869.5636112.98810.2316
NODDeveloping tillers at six leaf stage, 3rd internode1.524782.421766.261428.42516
CAR5Developing grain, bracts removed (5 DPA)2.812152.861552.851622.13863
CAR15Developing grain, bracts removed (15 DPA)1.124091.112350.7351531.95873



CDS Structure of MLOC_53829






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53829.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53829.1NoneAvailableAvailablecontig_38672 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g13870.3 +2 2e-157 474 247/281 (88%) 13109.m01279 protein lipid phosphatase protein, putative, expressed
TAIR PP10 AT1G15080.1 +2 5e-118 369 184/259 (71%) | Symbols: ATPAP2, ATLPP2, LPP2 | lipid phosphate phosphatase 2 | chr1:5188080-5189476 FORWARD LENGTH=290