MLOC_53826 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.841518.67547.27757.72672
LEAShoots from the seedlings (10 cm shoot stage)5.878127.466957.168925.76179
INF1Young developing inflorescences (5mm)12.785313.403212.276511.1276
INF2Developing inflorescences (1-1.5 cm)17.199715.787713.767417.6398
ROORoots from the seedlings (10 cm shoot stage)6.53049.477757.0830710.5926
NODDeveloping tillers at six leaf stage, 3rd internode3.089833.469053.6585910.7837
CAR5Developing grain, bracts removed (5 DPA)10.19969.4146310.41269.89381
CAR15Developing grain, bracts removed (15 DPA)2.418472.543542.56946.10785



CDS Structure of MLOC_53826






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53826.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364932NoneNoneNoneNone
MLOC_53826.2CUST_3146_PI427708080AvailableAvailablecontig_38669 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45300.1 +2 0.0 1126 616/856 (72%) 13103.m04879 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT4G38180.1 +2 3e-160 495 278/653 (43%) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788