MLOC_53804 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.50510.79813.184110.4432
LEAShoots from the seedlings (10 cm shoot stage)4.7286211.35412.41666.80404
INF1Young developing inflorescences (5mm)2.178492.589432.452341.65144
INF2Developing inflorescences (1-1.5 cm)2.322082.810543.145812.47239
ROORoots from the seedlings (10 cm shoot stage)11.014710.751211.812711.2118
NODDeveloping tillers at six leaf stage, 3rd internode8.8050410.005710.457830.2264
CAR5Developing grain, bracts removed (5 DPA)3.581742.923483.057782.62132
CAR15Developing grain, bracts removed (15 DPA)1.334540.7558190.5045751.8963



CDS Structure of MLOC_53804






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53804.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53804.1CUST_7562_PI427708083AvailableAvailablecontig_38653 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38840.2 -3 3e-79 259 126/141 (89%) 13102.m04281 protein glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
TAIR PP10 AT3G27300.3 -3 4e-64 218 105/138 (76%) | Symbols: G6PD5 | glucose-6-phosphate dehydrogenase 5 | chr3:10083318-10086288 REVERSE LENGTH=516