MLOC_53798 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains124.97995.602793.8885101.21
LEAShoots from the seedlings (10 cm shoot stage)59.11748.038961.404644.5674
INF1Young developing inflorescences (5mm)101.974114.22109.16394.7725
INF2Developing inflorescences (1-1.5 cm)93.378398.682898.813107.633
ROORoots from the seedlings (10 cm shoot stage)161.168107.44493.4296121.635
NODDeveloping tillers at six leaf stage, 3rd internode64.77570.813878.319194.684
CAR5Developing grain, bracts removed (5 DPA)105.326120.169103.112108.751
CAR15Developing grain, bracts removed (15 DPA)26.37925.651921.870961.7775



CDS Structure of MLOC_53798






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53798.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251093.1NoneNoneNoneNone
MLOC_53798.1CUST_3138_PI427708080AvailableAvailablecontig_38649 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g48930.1 +1 1e-123 359 178/200 (89%) 13103.m05287 protein peptidase, T1 family, putative, expressed
TAIR PP10 AT4G14800.1 +1 6e-105 310 150/193 (78%) | Symbols: PBD2 | 20S proteasome beta subunit D2 | chr4:8500398-8502058 FORWARD LENGTH=199