MLOC_53797 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.2294115.807113.553111.8018
LEAShoots from the seedlings (10 cm shoot stage)15.646218.410515.540712.8934
INF1Young developing inflorescences (5mm)10.474110.09417.951937.38217
INF2Developing inflorescences (1-1.5 cm)9.607359.9830910.26239.79876
ROORoots from the seedlings (10 cm shoot stage)7.5250314.257911.642313.7084
NODDeveloping tillers at six leaf stage, 3rd internode10.073510.88599.1217531.7477
CAR5Developing grain, bracts removed (5 DPA)17.562316.479217.050814.6863
CAR15Developing grain, bracts removed (15 DPA)9.222428.795937.8185417.988



CDS Structure of MLOC_53797






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53797.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374339NoneNoneNoneNone
MLOC_53797.6CUST_3137_PI427708080AvailableAvailablecontig_38649 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g48940.1 +2 0.0 1136 651/716 (91%) 13103.m05289 protein chloride channel protein CLC-d, putative, expressed
TAIR PP10 AT5G26240.1 +2 0.0 1048 590/754 (78%) | Symbols: CLC-D, ATCLC-D | chloride channel D | chr5:9189622-9194347 FORWARD LENGTH=792