MLOC_5374 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.029564900.0682885
LEAShoots from the seedlings (10 cm shoot stage)00.055407200.0504911
INF1Young developing inflorescences (5mm)0.02836110.029942600.0299114
INF2Developing inflorescences (1-1.5 cm)00.099995200.179385
ROORoots from the seedlings (10 cm shoot stage)0.0599734000.0364475
NODDeveloping tillers at six leaf stage, 3rd internode000.02077060.0419945
CAR5Developing grain, bracts removed (5 DPA)21.289526.745825.206625.7799
CAR15Developing grain, bracts removed (15 DPA)185.285197.826169.857455.997



CDS Structure of MLOC_5374






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5374.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5374.1CUST_13121_PI427708080AvailableAvailablecontig_136205 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32260.2 -1 1e-64 216 107/172 (62%) 13109.m03206 protein no apical meristem protein, putative, expressed
TAIR PP10 AT3G18400.1 -1 5e-62 207 102/171 (60%) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314