MLOC_53633 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8774161.289190.5846951.03961
LEAShoots from the seedlings (10 cm shoot stage)1.850962.36392.23951.63681
INF1Young developing inflorescences (5mm)1.418211.831541.727081.54699
INF2Developing inflorescences (1-1.5 cm)1.844771.667331.33932.02633
ROORoots from the seedlings (10 cm shoot stage)1.224770.6154311.589390.940435
NODDeveloping tillers at six leaf stage, 3rd internode1.311661.135831.898092.98269
CAR5Developing grain, bracts removed (5 DPA)0.6364620.7762020.7194780.812287
CAR15Developing grain, bracts removed (15 DPA)0.2029810.1461030.1772490.489774



CDS Structure of MLOC_53633






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53633.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53633.3CUST_13101_PI427708080AvailableAvailablecontig_38524 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g28370.2 +2 1e-51 171 98/124 (79%) 13105.m02921 protein expressed protein
TAIR PP10 AT5G58575.1 +2 2e-28 108 64/122 (52%) CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23674399-23675224 FORWARD LENGTH=181