morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_53620

Gene IDMLOC_53620
Source Contig contig_385163

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_53620 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0	2.57905	1.60862	0
LEA	Shoots from the seedlings (10 cm shoot stage)	3.32246	5.28966	2.14488	0
INF1	Young developing inflorescences (5mm)	3.18197	4.73628	6.51309	0
INF2	Developing inflorescences (1-1.5 cm)	5.36759	4.90956	5.14729	0
ROO	Roots from the seedlings (10 cm shoot stage)	2.07225	2.17317	1.57685	0
NOD	Developing tillers at six leaf stage, 3rd internode	3.40217	2.60469	2.1973	0
CAR5	Developing grain, bracts removed (5 DPA)	3.54989	7.2629	7.78962	0
CAR15	Developing grain, bracts removed (15 DPA)	18.6118	15.7184	15.2909	0

CDS Structure of MLOC_53620

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK377027

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK377027	CUST_23117_PI427708080	None	None	None
MLOC_27483.1	None	Available	None	contig_1835725 (Not mapped)
MLOC_28691.1	None	Available	None	contig_1940018 (Not mapped)
MLOC_30623.1	None	Available	None	contig_2114717 (Mapped)
MLOC_31129.3	None	Available	None	contig_215987 (Mapped)
MLOC_34771.2	None	Available	None	contig_2445542 (Not mapped)
MLOC_41744.1	None	Available	None	contig_2603991 (Not mapped)
MLOC_42515.1	None	Available	None	contig_2648486 (Not mapped)
MLOC_46762.3	None	Available	None	contig_295131 (Not mapped)
MLOC_50588.1	None	Available	None	contig_36251 (Not mapped)
MLOC_53620.1	None	Available	None	contig_385163 (Not mapped)
MLOC_70069.1	None	Available	None	contig_57396 (Mapped)
MLOC_70168.1	None	Available	None	contig_575326 (Not mapped)
MLOC_72444.2	None	Available	Available	contig_6167 (Mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-