MLOC_53599 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains168.584127.67138.372102.295
LEAShoots from the seedlings (10 cm shoot stage)107.90374.230466.749554.3084
INF1Young developing inflorescences (5mm)117.088139.072113.30672.3622
INF2Developing inflorescences (1-1.5 cm)82.2884.397869.301665.9792
ROORoots from the seedlings (10 cm shoot stage)139.203106.103117.76792.7001
NODDeveloping tillers at six leaf stage, 3rd internode104.20256.757338.8909121.596
CAR5Developing grain, bracts removed (5 DPA)103.439105.935105.73171.8509
CAR15Developing grain, bracts removed (15 DPA)20.483815.649421.091729.7919



CDS Structure of MLOC_53599






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53599.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53599.1CUST_12748_PI427708083AvailableAvailablecontig_385007 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g21970.1 +1 5e-27 105 53/54 (98%) 13102.m02462 protein 26S protease regulatory subunit 6B, putative, expressed
TAIR PP10 AT5G58290.1 +1 2e-27 105 53/54 (98%) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408