MLOC_53587 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07586280.07156010.04616660.0568186
LEAShoots from the seedlings (10 cm shoot stage)0.07044110.1136970.02572360.0454754
INF1Young developing inflorescences (5mm)1.196020.6917141.402750.831838
INF2Developing inflorescences (1-1.5 cm)12.36736.672628.034389.05778
ROORoots from the seedlings (10 cm shoot stage)00.015895700.0096365
NODDeveloping tillers at six leaf stage, 3rd internode00.005782470.009672540.0138079
CAR5Developing grain, bracts removed (5 DPA)0.04953840.0125880.01493910.0206779
CAR15Developing grain, bracts removed (15 DPA)0.06044470.08122610.1075250.148611



CDS Structure of MLOC_53587






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53587.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53587.2NoneAvailableAvailablecontig_38491 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g44750.1 -2 3e-83 207 107/216 (50%) 13111.m04462 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT1G24260.3 +3 2e-38 147 76/113 (67%) | Symbols: SEP3 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=237