MLOC_53551 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.117762.642262.884632.42874
LEAShoots from the seedlings (10 cm shoot stage)1.488540.3162170.1463230.598794
INF1Young developing inflorescences (5mm)10.259111.551710.77478.44516
INF2Developing inflorescences (1-1.5 cm)8.76118.804878.383069.06519
ROORoots from the seedlings (10 cm shoot stage)0.872692.21071.630382.26754
NODDeveloping tillers at six leaf stage, 3rd internode0.04567420.02057920.006927040.0637261
CAR5Developing grain, bracts removed (5 DPA)1.427091.195631.563031.26439
CAR15Developing grain, bracts removed (15 DPA)0.4262140.513480.390110.952711



CDS Structure of MLOC_53551






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53551.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53551.1CUST_13087_PI427708080AvailableAvailablecontig_38458 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01200.1 -1 0.0 960 512/643 (80%) 13103.m00024 protein SNF2 family N-terminal domain containing protein, expressed
TAIR PP10 AT2G44980.2 -1 0.0 695 375/633 (59%) SNF2 domain-containing protein / helicase domain-containing protein | chr2:18552343-18556669 REVERSE LENGTH=877