MLOC_5355 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.01063 | 7.55704 | 5.63614 | 6.9355 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 89.7691 | 140.342 | 182.961 | 108.178 |
| INF1 | Young developing inflorescences (5mm) | 8.33514 | 8.21608 | 8.38493 | 6.99161 |
| INF2 | Developing inflorescences (1-1.5 cm) | 6.77909 | 5.9677 | 7.34666 | 7.20595 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 16.4522 | 13.7976 | 11.6502 | 15.7635 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 24.9813 | 35.9706 | 39.5754 | 107.356 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 7.24767 | 7.03656 | 5.87936 | 6.63778 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 11.9285 | 13.539 | 11.1637 | 29.1118 |
CDS Structure of MLOC_5355
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5355.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g05140.2 |
+3 |
4e-162 |
482 |
303/469 (65%) |
13105.m00528 protein expressed protein |
| TAIR PP10 |
AT4G02920.1 |
+3 |
2e-41 |
157 |
125/377 (33%) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292816-1294670 FORWARD LENGTH=418 |
