MLOC_53533 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.353129.623738.406737.91844
LEAShoots from the seedlings (10 cm shoot stage)17.258113.47111.140911.8233
INF1Young developing inflorescences (5mm)27.620627.081923.837821.5918
INF2Developing inflorescences (1-1.5 cm)21.697223.201321.0923.5688
ROORoots from the seedlings (10 cm shoot stage)6.0264810.70558.0116911.3453
NODDeveloping tillers at six leaf stage, 3rd internode1.323922.839556.7106311.245
CAR5Developing grain, bracts removed (5 DPA)11.377611.690912.411911.0337
CAR15Developing grain, bracts removed (15 DPA)2.784313.139193.092496.46533



CDS Structure of MLOC_53533






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53533.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53533.1CUST_13084_PI427708080AvailableAvailablecontig_38442 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g07840.1 -2 0.0 1230 645/876 (74%) 13108.m00805 protein PolI-like DNA polymerase, putative, expressed
TAIR PP10 AT1G50840.1 -2 0.0 1019 526/814 (65%) | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839277-18844313 FORWARD LENGTH=1050