MLOC_53532 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1812420.1188390.107253
LEAShoots from the seedlings (10 cm shoot stage)0.03795210.1414250.06188020.0537365
INF1Young developing inflorescences (5mm)0.03792680.09774040.1164440.0624221
INF2Developing inflorescences (1-1.5 cm)0.07466220.09452780.04775250.0811654
ROORoots from the seedlings (10 cm shoot stage)0.5846620.03666890.07959180.0668838
NODDeveloping tillers at six leaf stage, 3rd internode0.3154570.1277090.1230010.312192
CAR5Developing grain, bracts removed (5 DPA)0.1412870.05287840.09829240.0870598
CAR15Developing grain, bracts removed (15 DPA)00.024044700.0190228



CDS Structure of MLOC_53532






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53532.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372505NoneNoneNoneNone
MLOC_53532.1CUST_3108_PI427708080AvailableAvailablecontig_38442 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g54510.1 +3 8e-144 437 242/347 (70%) 13104.m05639 protein mTERF family protein, expressed
TAIR PP10 AT5G07900.1 +3 2e-33 134 92/333 (28%) Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405