MLOC_53511 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.67175.714676.314957.42841
LEAShoots from the seedlings (10 cm shoot stage)5.02121.563012.120472.89819
INF1Young developing inflorescences (5mm)19.574622.647726.670622.7707
INF2Developing inflorescences (1-1.5 cm)38.621135.819135.408747.0759
ROORoots from the seedlings (10 cm shoot stage)3.369164.590625.969856.75143
NODDeveloping tillers at six leaf stage, 3rd internode6.8404412.089111.227943.6823
CAR5Developing grain, bracts removed (5 DPA)6.98577.21046.76218.54587
CAR15Developing grain, bracts removed (15 DPA)2.018011.648521.986365.27548



CDS Structure of MLOC_53511






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53511.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53511.1CUST_13081_PI427708080AvailableAvailablecontig_38424 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g02500.1 +2 0.0 751 420/511 (82%) 13102.m00190 protein remorin family protein, putative, expressed
TAIR PP10 AT2G02170.2 +2 1e-109 350 241/520 (46%) Remorin family protein | chr2:556595-558610 REVERSE LENGTH=486