MLOC_53501 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5647340.7294740.6114960.622229
LEAShoots from the seedlings (10 cm shoot stage)0.7037491.07981.165440.763894
INF1Young developing inflorescences (5mm)0.6938840.3966340.3880920.437521
INF2Developing inflorescences (1-1.5 cm)0.7478480.8856410.5076390.837787
ROORoots from the seedlings (10 cm shoot stage)0.5894530.4180430.3398410.452956
NODDeveloping tillers at six leaf stage, 3rd internode0.2855860.5640020.5555511.65653
CAR5Developing grain, bracts removed (5 DPA)0.3563520.4571640.5969340.427162
CAR15Developing grain, bracts removed (15 DPA)0.09851310.2202560.179670.363926



CDS Structure of MLOC_53501






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53501.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53501.1NoneAvailableAvailablecontig_38420 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g03770.1 +1 2e-19 94 46/54 (85%) 13106.m00319 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT5G58270.1 +1 1e-17 87 41/54 (76%) | Symbols: STA1, ATATM3, ATM3 | ABC transporter of the mitochondrion 3 | chr5:23562168-23567040 FORWARD LENGTH=728