MLOC_53473 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains120.15184.469192.784395.2864
LEAShoots from the seedlings (10 cm shoot stage)78.1962107.74878.743171.9262
INF1Young developing inflorescences (5mm)26.604226.765332.420426.3141
INF2Developing inflorescences (1-1.5 cm)18.615719.329419.599922.7003
ROORoots from the seedlings (10 cm shoot stage)167.52570.0038102.86895.3911
NODDeveloping tillers at six leaf stage, 3rd internode117.623109.165129.557319.829
CAR5Developing grain, bracts removed (5 DPA)38.631944.668541.278244.3682
CAR15Developing grain, bracts removed (15 DPA)14.942613.834313.260436.3541



CDS Structure of MLOC_53473






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53473.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365034NoneNoneNoneNone
MLOC_53473.1CUST_3102_PI427708080AvailableAvailablecontig_38394 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g12830.1 +1 9e-157 452 262/316 (83%) 13101.m01401 protein erythronate-4-phosphate dehydrogenase domain containing protein, expressed
TAIR PP10 AT1G79870.1 +1 6e-125 370 218/316 (69%) D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313