MLOC_53469 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.773828.772823.042526.6443
LEAShoots from the seedlings (10 cm shoot stage)457.335824.8441128.68576.796
INF1Young developing inflorescences (5mm)23.305318.860125.470319.7234
INF2Developing inflorescences (1-1.5 cm)12.053913.929217.498315.9856
ROORoots from the seedlings (10 cm shoot stage)2.61455.6327511.36246.24032
NODDeveloping tillers at six leaf stage, 3rd internode293.991311.597440.664729.142
CAR5Developing grain, bracts removed (5 DPA)110.209140.348116.715124.291
CAR15Developing grain, bracts removed (15 DPA)11.064315.723515.009135.3214



CDS Structure of MLOC_53469






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53469.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358225NoneNoneNoneNone
MLOC_53469.2CUST_3100_PI427708080AvailableAvailablecontig_38392 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48630.2 +1 3e-56 182 124/143 (87%) 13105.m05182 protein expressed protein
TAIR PP10 AT1G52230.1 +1 9e-43 146 94/145 (65%) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145