- Predicted Gene MLOC_53436
MLOC_53436 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 0.221453 | 0.453432 | 0.240006 | 0.451467 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.356746 | 0.216306 | 0.0787573 | 0.210342 |
| INF1 | Young developing inflorescences (5mm) | 1.02519 | 0.840752 | 0.807173 | 0.891569 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.999649 | 0.74091 | 0.95384 | 1.13967 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.149236 | 0.181355 | 0.645874 | 0.375607 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0.0105895 | 0.0469061 | 0.104333 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.367288 | 0.449474 | 0.410411 | 0.514611 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.0809388 | 0.201566 | 0.0597744 | 0.3859 |
CDS Structure of MLOC_53436
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53436.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g45910.1 |
+1 |
0.0 |
538 |
259/356 (73%) |
13104.m04606 protein placental protein 11 precursor, putative, expressed |
| TAIR PP10 |
AT4G17100.1 |
+1 |
2e-151 |
444 |
205/345 (59%) |
CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434 |