MLOC_53436 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2214530.4534320.2400060.451467
LEAShoots from the seedlings (10 cm shoot stage)0.3567460.2163060.07875730.210342
INF1Young developing inflorescences (5mm)1.025190.8407520.8071730.891569
INF2Developing inflorescences (1-1.5 cm)0.9996490.740910.953841.13967
ROORoots from the seedlings (10 cm shoot stage)0.1492360.1813550.6458740.375607
NODDeveloping tillers at six leaf stage, 3rd internode00.01058950.04690610.104333
CAR5Developing grain, bracts removed (5 DPA)0.3672880.4494740.4104110.514611
CAR15Developing grain, bracts removed (15 DPA)0.08093880.2015660.05977440.3859



CDS Structure of MLOC_53436






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53436.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53436.3CUST_7517_PI427708083AvailableAvailablecontig_38370 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45910.1 +1 0.0 538 259/356 (73%) 13104.m04606 protein placental protein 11 precursor, putative, expressed
TAIR PP10 AT4G17100.1 +1 2e-151 444 205/345 (59%) CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434