MLOC_53435 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.063913.536112.927112.138
LEAShoots from the seedlings (10 cm shoot stage)12.38119.55229.334978.50453
INF1Young developing inflorescences (5mm)52.753858.232555.402642.0186
INF2Developing inflorescences (1-1.5 cm)44.604147.281543.045345.3248
ROORoots from the seedlings (10 cm shoot stage)7.0774813.57479.1725613.0353
NODDeveloping tillers at six leaf stage, 3rd internode1.348513.262499.4578113.2025
CAR5Developing grain, bracts removed (5 DPA)23.726522.229923.379619.823
CAR15Developing grain, bracts removed (15 DPA)6.131465.65494.6723411.7315



CDS Structure of MLOC_53435






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53435.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53435.4CUST_13071_PI427708080AvailableAvailablecontig_38369 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g39210.1 +2 0.0 909 480/637 (75%) 13109.m03926 protein nuclear pore protein-like, putative, expressed
TAIR PP10 AT5G40480.1 +2 5e-130 427 264/640 (41%) | Symbols: EMB3012 | embryo defective 3012 | chr5:16213361-16223982 FORWARD LENGTH=1923