MLOC_53422 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1514750.19331500.245959
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.1773740.053104700.155394
ROORoots from the seedlings (10 cm shoot stage)0.1423520.14956300.258797
NODDeveloping tillers at six leaf stage, 3rd internode0.0424800.03858620.0450829
CAR5Developing grain, bracts removed (5 DPA)7.724318.951124.539467.50526
CAR15Developing grain, bracts removed (15 DPA)361.09383.71391.4161039.29



CDS Structure of MLOC_53422






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53422.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53422.1CUST_17733_PI427708080AvailableAvailablecontig_38354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g36170.1 +1 3e-23 93 37/66 (56%) 13110.m03268 protein LTPL160 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
TAIR PP10 AT5G38170.1 +1 4e-20 84 34/66 (52%) Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:15227717-15228028 FORWARD LENGTH=103