MLOC_53420 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4919611.699292.165241.44311
LEAShoots from the seedlings (10 cm shoot stage)00.7984490.2204780.485611
INF1Young developing inflorescences (5mm)0.2928950.29383900.268833
INF2Developing inflorescences (1-1.5 cm)1.556410.5491230.6466181.01582
ROORoots from the seedlings (10 cm shoot stage)0.2792970.4755481.48040.61356
NODDeveloping tillers at six leaf stage, 3rd internode0.25439400.07739680.0927992
CAR5Developing grain, bracts removed (5 DPA)0.1536980.9560810.8252910.600185
CAR15Developing grain, bracts removed (15 DPA)3811.263357.53665.087650.7



CDS Structure of MLOC_53420






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53420.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53420.2CUST_12744_PI427708083AvailableAvailablecontig_38354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g35940.1 +3 2e-37 135 62/73 (85%) 13107.m03680 protein beta-amylase, putative
TAIR PP10 AT2G32290.1 +3 3e-29 112 48/72 (67%) | Symbols: BMY5, BAM6 | beta-amylase 6 | chr2:13714643-13716906 REVERSE LENGTH=577