- Predicted Gene MLOC_53420
MLOC_53420 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 0.491961 | 1.69929 | 2.16524 | 1.44311 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0.798449 | 0.220478 | 0.485611 |
| INF1 | Young developing inflorescences (5mm) | 0.292895 | 0.293839 | 0 | 0.268833 |
| INF2 | Developing inflorescences (1-1.5 cm) | 1.55641 | 0.549123 | 0.646618 | 1.01582 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.279297 | 0.475548 | 1.4804 | 0.61356 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.254394 | 0 | 0.0773968 | 0.0927992 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.153698 | 0.956081 | 0.825291 | 0.600185 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3811.26 | 3357.5 | 3665.08 | 7650.7 |
CDS Structure of MLOC_53420
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53420.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g35940.1 |
+3 |
2e-37 |
135 |
62/73 (85%) |
13107.m03680 protein beta-amylase, putative |
| TAIR PP10 |
AT2G32290.1 |
+3 |
3e-29 |
112 |
48/72 (67%) |
| Symbols: BMY5, BAM6 | beta-amylase 6 | chr2:13714643-13716906 REVERSE LENGTH=577 |