MLOC_53405 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.7310212.270810.984610.4224
LEAShoots from the seedlings (10 cm shoot stage)8.989674.946983.192775.22848
INF1Young developing inflorescences (5mm)28.871825.50223.352122.3593
INF2Developing inflorescences (1-1.5 cm)27.035930.53923.444431.4281
ROORoots from the seedlings (10 cm shoot stage)2.272916.474563.762117.54292
NODDeveloping tillers at six leaf stage, 3rd internode7.05729.389665.1029632.2191
CAR5Developing grain, bracts removed (5 DPA)11.902210.16412.339911.481
CAR15Developing grain, bracts removed (15 DPA)9.37077.957319.1804920.2395



CDS Structure of MLOC_53405






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53405.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53405.1CUST_13063_PI427708080AvailableAvailablecontig_38333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g06980.1 +3 6e-73 274 302/1025 (29%) 13112.m00723 protein SAP domain containing protein, expressed
TAIR PP10None-----