MLOC_5337 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 28.1867 | 22.3159 | 21.9085 | 26.6283 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 21.3562 | 17.0582 | 18.6684 | 17.5576 |
| INF1 | Young developing inflorescences (5mm) | 36.1073 | 35.0181 | 34.6841 | 33.0351 |
| INF2 | Developing inflorescences (1-1.5 cm) | 28.2994 | 27.4547 | 29.4759 | 33.9059 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 27.969 | 24.2814 | 30.0818 | 34.7895 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 13.1293 | 20.827 | 32.5082 | 81.6296 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 23.4613 | 26.827 | 24.3051 | 27.4292 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 14.1355 | 14.8424 | 16.6822 | 38.3362 |
CDS Structure of MLOC_5337
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_5337.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g10080.1 |
+1 |
3e-141 |
411 |
231/297 (78%) |
13102.m01114 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed |
| TAIR PP10 |
AT5G06770.1 |
+1 |
5e-52 |
178 |
105/207 (51%) |
KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240 |
