MLOC_53346 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.353672.660593.598692.39837
LEAShoots from the seedlings (10 cm shoot stage)7.0651710.735912.17987.47286
INF1Young developing inflorescences (5mm)4.480945.336325.036053.65614
INF2Developing inflorescences (1-1.5 cm)4.376697.63295.484065.86567
ROORoots from the seedlings (10 cm shoot stage)3.33542.88243.607653.20408
NODDeveloping tillers at six leaf stage, 3rd internode10.146213.67812.68238.1805
CAR5Developing grain, bracts removed (5 DPA)9.621297.630638.240917.13804
CAR15Developing grain, bracts removed (15 DPA)3.817484.937645.469829.17903



CDS Structure of MLOC_53346






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53346.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53346.3CUST_12739_PI427708083AvailableAvailablecontig_382748 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g59070.1 -3 3e-27 107 50/53 (94%) 13103.m06487 protein phosphatase, putative, expressed
TAIR PP10 AT3G58490.2 -3 6e-24 96 42/56 (75%) Phosphatidic acid phosphatase (PAP2) family protein | chr3:21633362-21635057 FORWARD LENGTH=346