MLOC_53327 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.659510.555510.397315.2974
LEAShoots from the seedlings (10 cm shoot stage)9.293938.687269.3379610.4233
INF1Young developing inflorescences (5mm)15.343412.833411.343913.9622
INF2Developing inflorescences (1-1.5 cm)10.741412.247312.950317.8487
ROORoots from the seedlings (10 cm shoot stage)8.8491512.258814.383724.6941
NODDeveloping tillers at six leaf stage, 3rd internode1.697181.999957.7035713.7999
CAR5Developing grain, bracts removed (5 DPA)12.368314.091413.362518.9616
CAR15Developing grain, bracts removed (15 DPA)7.646658.552515.2893322.6388



CDS Structure of MLOC_53327






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53327.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369254NoneNoneNoneNone
MLOC_53327.1CUST_3086_PI427708080AvailableAvailablecontig_38257 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g30880.1 +2 8e-106 329 260/366 (71%) 13105.m03166 protein nucleolar matrix protein-related, putative, expressed
TAIR PP10 AT5G05210.2 +2 8e-31 124 107/228 (47%) Surfeit locus protein 6 | chr5:1548398-1549534 FORWARD LENGTH=378