MLOC_53292 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.044716.819226.267496.75002
LEAShoots from the seedlings (10 cm shoot stage)7.037986.7711910.48337.18889
INF1Young developing inflorescences (5mm)10.89111.210210.94169.89724
INF2Developing inflorescences (1-1.5 cm)12.2111.539311.361813.3997
ROORoots from the seedlings (10 cm shoot stage)3.948914.488874.646765.64215
NODDeveloping tillers at six leaf stage, 3rd internode3.459093.621119.2585815.4925
CAR5Developing grain, bracts removed (5 DPA)6.454485.961586.183436.29925
CAR15Developing grain, bracts removed (15 DPA)1.529441.465731.5293.69628



CDS Structure of MLOC_53292






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53292.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353833NoneNoneNoneNone
MLOC_53292.7CUST_3080_PI427708080AvailableAvailablecontig_38211 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g12500.2 +3 0.0 889 467/550 (85%) 13109.m07559 protein EMB1381, putative, expressed
TAIR PP10 AT2G31340.1 +3 0.0 550 276/555 (50%) | Symbols: emb1381 | embryo defective 1381 | chr2:13361614-13364633 FORWARD LENGTH=559