- Predicted Gene MLOC_53292
MLOC_53292 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 5.04471 | 6.81922 | 6.26749 | 6.75002 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 7.03798 | 6.77119 | 10.4833 | 7.18889 |
INF1 | Young developing inflorescences (5mm) | 10.891 | 11.2102 | 10.9416 | 9.89724 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.21 | 11.5393 | 11.3618 | 13.3997 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.94891 | 4.48887 | 4.64676 | 5.64215 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.45909 | 3.62111 | 9.25858 | 15.4925 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.45448 | 5.96158 | 6.18343 | 6.29925 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.52944 | 1.46573 | 1.529 | 3.69628 |
CDS Structure of MLOC_53292
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53292.7
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g12500.2 |
+3 |
0.0 |
889 |
467/550 (85%) |
13109.m07559 protein EMB1381, putative, expressed |
TAIR PP10 |
AT2G31340.1 |
+3 |
0.0 |
550 |
276/555 (50%) |
| Symbols: emb1381 | embryo defective 1381 | chr2:13361614-13364633 FORWARD LENGTH=559 |