MLOC_53258 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.364715.715966.873974.79143
LEAShoots from the seedlings (10 cm shoot stage)248.491448.56454.771261.225
INF1Young developing inflorescences (5mm)10.93368.2875911.00767.44762
INF2Developing inflorescences (1-1.5 cm)8.6396810.580914.698110.068
ROORoots from the seedlings (10 cm shoot stage)0.4581952.065217.491512.15811
NODDeveloping tillers at six leaf stage, 3rd internode239.695101.362230.823310.738
CAR5Developing grain, bracts removed (5 DPA)58.695568.26770.661353.025
CAR15Developing grain, bracts removed (15 DPA)17.051118.338718.632836.4132



CDS Structure of MLOC_53258






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53258.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359226NoneNoneNoneNone
MLOC_53258.1CUST_3076_PI427708080AvailableAvailablecontig_38184 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g23200.1 +2 4e-117 364 189/209 (90%) 13112.m02357 protein photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
TAIR PP10 AT4G12800.1 +2 2e-84 275 152/217 (70%) | Symbols: PSAL | photosystem I subunit l | chr4:7521469-7522493 FORWARD LENGTH=219