MLOC_53255 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.958977.776286.530798.60243
LEAShoots from the seedlings (10 cm shoot stage)7.517665.035688.851387.1149
INF1Young developing inflorescences (5mm)12.967812.993915.169712.6352
INF2Developing inflorescences (1-1.5 cm)16.815817.448915.316619.308
ROORoots from the seedlings (10 cm shoot stage)5.428818.237335.234910.9488
NODDeveloping tillers at six leaf stage, 3rd internode3.833977.952438.3624430.3093
CAR5Developing grain, bracts removed (5 DPA)11.292112.70411.792412.3478
CAR15Developing grain, bracts removed (15 DPA)11.17710.302410.523726.061



CDS Structure of MLOC_53255






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53255.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53255.7CUST_13049_PI427708080AvailableAvailablecontig_38183 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46710.1 +3 3e-74 253 186/423 (44%) 13101.m04803 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10None-----