MLOC_53254 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.301969.445479.715759.52335
LEAShoots from the seedlings (10 cm shoot stage)11.216612.457110.318710.1038
INF1Young developing inflorescences (5mm)24.355322.67721.030922.4609
INF2Developing inflorescences (1-1.5 cm)35.256635.985728.687343.08
ROORoots from the seedlings (10 cm shoot stage)3.4683313.08767.0863215.5628
NODDeveloping tillers at six leaf stage, 3rd internode4.124885.173062.9912215.6146
CAR5Developing grain, bracts removed (5 DPA)24.3725.662220.534527.2773
CAR15Developing grain, bracts removed (15 DPA)17.671918.086616.40247.0796



CDS Structure of MLOC_53254






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53254.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53254.1CUST_7498_PI427708083AvailableAvailablecontig_38183 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46710.1 +2 4e-54 193 96/119 (81%) 13101.m04803 protein transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10None-----