MLOC_53224 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains287.112164.582172.203196.347
LEAShoots from the seedlings (10 cm shoot stage)64.187961.467598.160960.8509
INF1Young developing inflorescences (5mm)58.596676.113185.182161.1941
INF2Developing inflorescences (1-1.5 cm)58.255552.089949.352960.4135
ROORoots from the seedlings (10 cm shoot stage)326.419146.303142.287199.304
NODDeveloping tillers at six leaf stage, 3rd internode93.385984.940363.2367245.203
CAR5Developing grain, bracts removed (5 DPA)54.158369.60762.625664.2072
CAR15Developing grain, bracts removed (15 DPA)13.213211.912813.008829.6923



CDS Structure of MLOC_53224






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53224.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53224.1CUST_17732_PI427708080AvailableAvailablecontig_38160 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g21470.1 +1 1e-28 104 53/65 (82%) 13109.m02055 protein expressed protein
TAIR PP10 AT3G47833.1 +1 6e-20 81 39/58 (67%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17648721-17649829 FORWARD LENGTH=93