MLOC_53215 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.311527.56829.80330.1505
LEAShoots from the seedlings (10 cm shoot stage)20.57453.134276.972719.16444
INF1Young developing inflorescences (5mm)30.002628.595429.729925.368
INF2Developing inflorescences (1-1.5 cm)33.293438.865334.323939.6944
ROORoots from the seedlings (10 cm shoot stage)18.573921.468818.346526.4014
NODDeveloping tillers at six leaf stage, 3rd internode9.727729.662124.4258227.0458
CAR5Developing grain, bracts removed (5 DPA)15.472118.400818.049317.3572
CAR15Developing grain, bracts removed (15 DPA)8.011387.798127.9708818.7759



CDS Structure of MLOC_53215






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53215.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370556NoneNoneNoneNone
MLOC_53215.1CUST_3071_PI427708080AvailableAvailablecontig_38150 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71200.1 +2 0.0 658 363/426 (85%) 13101.m07753 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT4G03110.1 +2 1e-149 442 268/431 (62%) | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441