MLOC_53175 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains298.229387.946353.328370.04
LEAShoots from the seedlings (10 cm shoot stage)290.581148.347151.399172.862
INF1Young developing inflorescences (5mm)119.1106.2395.701693.9371
INF2Developing inflorescences (1-1.5 cm)86.067799.486292.9892105.239
ROORoots from the seedlings (10 cm shoot stage)475.868448.717269.468536.437
NODDeveloping tillers at six leaf stage, 3rd internode744.752811.513583.3462477.75
CAR5Developing grain, bracts removed (5 DPA)219.757215.542221.929219.997
CAR15Developing grain, bracts removed (15 DPA)25.090423.871824.563656.9134



CDS Structure of MLOC_53175






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53175.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356738NoneNoneNoneNone
MLOC_53175.2CUST_3067_PI427708080AvailableAvailablecontig_38116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g42876.1 -3 0.0 1340 719/766 (94%) 13112.m22136 protein 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
TAIR PP10 AT5G17920.2 -3 0.0 1256 671/766 (88%) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765