MLOC_5316 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains53.374247.717551.912458.3586
LEAShoots from the seedlings (10 cm shoot stage)3.810991.218382.232612.31649
INF1Young developing inflorescences (5mm)0.1441270.19042400.176922
INF2Developing inflorescences (1-1.5 cm)000.09965640.119687
ROORoots from the seedlings (10 cm shoot stage)5.7115710.23197.7812214.5841
NODDeveloping tillers at six leaf stage, 3rd internode1.878751.309211.078144.95666
CAR5Developing grain, bracts removed (5 DPA)0.279060.3602240.4247580.456678
CAR15Developing grain, bracts removed (15 DPA)0.02880630.031228300.107376



CDS Structure of MLOC_5316






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5316.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5316.1CUST_13037_PI427708080AvailableAvailablecontig_136119 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45070.1 -3 5e-43 153 112/148 (76%) 13104.m04514 protein remorin, putative, expressed
TAIR PP10 AT5G23750.2 -3 5e-32 122 94/139 (68%) Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201