MLOC_53144 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.356818.980121.126718.9114
LEAShoots from the seedlings (10 cm shoot stage)12.992712.073819.227411.193
INF1Young developing inflorescences (5mm)10.530210.39379.844898.70238
INF2Developing inflorescences (1-1.5 cm)3.486183.391546.410964.51111
ROORoots from the seedlings (10 cm shoot stage)40.701226.459126.408828.9965
NODDeveloping tillers at six leaf stage, 3rd internode16.631519.028919.010950.7674
CAR5Developing grain, bracts removed (5 DPA)7.85275.825995.366056.05593
CAR15Developing grain, bracts removed (15 DPA)1.767111.303851.490423.55945



CDS Structure of MLOC_53144






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53144.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53144.1CUST_13035_PI427708080AvailableAvailablecontig_38089 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28000.1 -2 1e-140 422 284/418 (68%) 13109.m02756 protein OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed
TAIR PP10 AT2G30440.1 -2 1e-84 273 127/186 (68%) | Symbols: TPP | thylakoid processing peptide | chr2:12973244-12975027 FORWARD LENGTH=340