MLOC_53136 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.972519.178616.89523.0045
LEAShoots from the seedlings (10 cm shoot stage)6.392385.403415.257285.47739
INF1Young developing inflorescences (5mm)20.088319.929118.26818.6471
INF2Developing inflorescences (1-1.5 cm)13.544614.693511.775217.1136
ROORoots from the seedlings (10 cm shoot stage)10.577913.03159.7965719.1096
NODDeveloping tillers at six leaf stage, 3rd internode2.036522.623672.728329.97376
CAR5Developing grain, bracts removed (5 DPA)11.951514.270415.068916.2305
CAR15Developing grain, bracts removed (15 DPA)3.302812.993423.180838.3839



CDS Structure of MLOC_53136






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_53136.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_53136.1CUST_13031_PI427708080AvailableAvailablecontig_38082 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45390.1 -1 3e-104 315 163/197 (83%) 13106.m04783 protein expressed protein
TAIR PP10 AT1G53645.1 -1 3e-69 226 116/195 (59%) hydroxyproline-rich glycoprotein family protein | chr1:20026434-20028587 REVERSE LENGTH=523