- Predicted Gene MLOC_53136
MLOC_53136 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_53136_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 22.9725 | 19.1786 | 16.895 | 23.0045 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 6.39238 | 5.40341 | 5.25728 | 5.47739 |
INF1 | Young developing inflorescences (5mm) | 20.0883 | 19.9291 | 18.268 | 18.6471 |
INF2 | Developing inflorescences (1-1.5 cm) | 13.5446 | 14.6935 | 11.7752 | 17.1136 |
ROO | Roots from the seedlings (10 cm shoot stage) | 10.5779 | 13.0315 | 9.79657 | 19.1096 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.03652 | 2.62367 | 2.72832 | 9.97376 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.9515 | 14.2704 | 15.0689 | 16.2305 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.30281 | 2.99342 | 3.18083 | 8.3839 |
CDS Structure of MLOC_53136
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_53136.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g45390.1 |
-1 |
3e-104 |
315 |
163/197 (83%) |
13106.m04783 protein expressed protein |
TAIR PP10 |
AT1G53645.1 |
-1 |
3e-69 |
226 |
116/195 (59%) |
hydroxyproline-rich glycoprotein family protein | chr1:20026434-20028587 REVERSE LENGTH=523 |